colocalization - 技术专题

LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.

🧬High-performance genetics- and genomics-related data visualization using Makie.jl

Colocalization analysis of genetic association signals

Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.

An R package for conducting co-localization analysis. Edit

Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).

echoverse module: Locus plot creation for fine-mapping and colocalization studies.

Nextflow pipeline to perform genetic correlations with GWAS summary statistics (LDSC and LAVA)

Online app for playing the coLoc game (https://biop.github.io/coLoc/)

An automated tool for Object-based colocalization in fluorescence microscopy images.

An ImageJ macro for 2D colocalization of IHC signals in ImageJ and counting RNAscope puncta within cells.

A 3D Slicer extension for interactive 3D visualization and quantitative colocalization analysis of multi-channel confocal z-stack images.

Preprocess, noise-reduction, threshold & quantify images to get box plots for each class (mainly cell cultures of different cel llines). Colocalization due to a naive trick of counting all overlapping signals/pixels. Could be done in ImageJ as well, but i thought this is better suited than fiddling with macros.

Python lib to create co-locations between Sentinel-1 IW or EW images and SWOT KaRin swath.

Fine mapping analysis within the pQTL pipeline project

MR for multiple exposures implemented using nextflow

This is a fork from qqman package

lib python to generate colocs S1 WV Level-2 OCN with CMEMS WAV L3 or CCI seatstate altimeters L2P

Analyses for the publication titled "Integrating disease and drug-related phenotypes for improved identification of pharmacogenomic variants"